Rough Transcript of my Opening Remarks

Dear Colleagues:

 It is an honor to be asked to address this group, some of whom I seem to see more than my own family, to set the stage for this 2011 Microsoft Research sponsored eScience workshop on Transforming Scholarly Communication.

 The first fundamental question to ask is, do we need a transformation in the first place? Obviously we all believe we do otherwise we would not be here, but what about the majority of scholars? I use my colleagues up and down the corridor as a benchmark to answer that question. A group currently oblivious to much of what we will show tomorrow. But nevertheless a group increasingly not oblivious to the changes going on around them – data sharing policies, cuts in library budgets, open access, and our students. Let me illustrate this latter point with a recent example of something remarkable that happened to me.

 A couple of months ago I received by email a paper to PLoS Comp Biol. This happens from time to time as authors try and circumvent the standard submission procedure and contact me as Editor in Chief directly. It was a paper in pandemic modeling, which appeared to question conventional approaches to such modeling. Not being an expert here I sent the manuscript to Simon Levin in Princeton who is on our Editorial Board for his opinion. Simon is a Kyoto Prize winner and an expert in large-scale biological modeling. He indicated there was something special about this well written paper. Since the sole author was living in San Diego I agreed to meet with her and discuss the work. Simply by asking she had received a large amount of free computer time from the San Diego Supercomputer Center (SDSC), got free access to Mathamatica and had clearly benefited from the open access literature as well as resources like Wikipedia. I encouraged her to submit the work to Science, which she has done, and it is currently under review.

 

The sole author’s name is Meredith.  What makes this story remarkable, is that she is 15 years old and a senior at La Jolla High School in San Diego. She subsequently presented her work at my lab meeting, which I must say was much better attended than usual. Sitting there with my eyes closed I thought I was in the presence of a professor deep into their area of expertise. It was only when I opened my eyes and saw the braces did reality sink in.

Clearly this is an extreme case, but lets not be modest, what we are trying to do here is enable anyone with an Internet connection and a will to learn, achieve what Meredith has achieved. I cannot think of a more noble cause. While we have seen this possibility for a long time, what is new is that others are now seeing it too.

We all have our own Meredith stories or at the very least some driver that moves us in the same way. For some it is the glacial pace at which knowledge exchange takes place; for others it is the sense of unease about the lack of reproducibility in our own science; for others it is the inaccessibility of knowledge; and for others still it is the totally qualitative way quantitative scientists measure the value of scholarship.

With Meredith as our motivation, let us take a minute to analyze the path we are on towards transforming scholarship through what has happened this past year and then what might happen as a result of this workshop.

2011 may well be remembered as the year that stakeholders – scientists, publishers, archivists and librarians, developers, funders, and decision makers went from working in isolation to beginning to work together. What started with Beyond the PDF in January had become a “movement” by the time the summer meetings were over. The Dagstuhl meeting captured the spirit in a manifesto that should become a living document for us all to consider. Movements have transformed entrenched systems before and it remains an open and very exciting question as to whether that will happen here. For a small group to cause change to many requires that the many believe that change is needed and gradually get on board. I believe that time has come.

The driver of change is the ground swell towards open science. When I first heard that a group of prominent life scientists got together and agreed to start a new open access journal I was disappointed – such vision coming up with something that we had already. But if the effort by HHMI, Wellcome Trust and Max Plank does indeed compete with Science and Nature it will precipitate change. My sense is that Publishers see the writing on the wall, or more appropriately the screen and the smart ones are gearing up to a future with different business models. The winning publishers will move from serving science through scientific process and dissemination to doing that plus enabling knowledge discovery, more equitable reward systems and improving comprehension by a broader audience. Interestingly, it is not clear to me, based on my interactions with OAPSA, that open access publishers see it that way. Many simply see delivering papers as before, but with a different revenue model. Ironically even if they see the promise of change, they do not have the resources to make it happen. We must help them and that is why meetings like this one are so important. A serious example of what we must fix is the lack of consistent representation of their papers in XML. PubMed Central will come back to haunt us when developers begin to seriously try and use the content. This is history repeating itself – look at the biological databases. We should learn from history.

Open science is more that changing how we interface with the final product it is interfacing with the complete scientific process – motivation, ideas, hypotheses, experiments to test the hypotheses, data generated, analysis of that data, conclusions and  awareness. This is a tall order and I believe we need to proceed in steps. Clearly access and effective use of data is a valuable next step. Funders are demanding it, scientists (to some degree) are providing it and repositories exist to accept it. But right now it is a mess, but we have an opportunity. Ontologies exist, some tools exist and so we have the opportunity NOT to repeat the horrible loss of productivity we see in the publishing world of rehashing the same material for different publishers. Let us define and implement data standards and input mechanisms that capture the generic metadata, provide the hooks for more domain specific deeper content and allow a more universal deposition and search. We need to do this now before systems become entrenched. Otherwise Google, Bing and the like will be our tools for data discovery – we need deep and meaningful search of data.

Let me conclude with a couple of thoughts on what I believe should come from the workshop. 

1.     We will hear about some wonderful tools and innovative software developments to support scholarly communication – we must define a way to aggregate these efforts to facilitate uptake by others around a focused and shared development effort.

2.     We need to define ways to recruit to the movement – it will take more than tools to do so – are there clear wins for all concerned? If so what are they? Platforms to disseminate scholarship, new reward systems, knowledge discovery from open access content, proven improved comprehension.

What can we do so that more 15 year olds are active contributors to scholarship? This is our challenge. Thank you very much.

 

 

 

 

 

 

Bios of the Organizers

Bio sketches of the meeting organizers, who will float from group to group:

  1. Alyssa Goodman, Harvard University
  2. Alberto Pepe, Harvard University
  3. Mary Lee Kennedy, Harvard University
  4. Malgorzata (Gosia) Stergios, Harvard University
  5. Lee Dirks, Microsoft Research
  6. Alex Wade, Microsoft Research
  7.  Joshua M. Greenberg, Alfred P. Sloan Foundation
  8. Chris Mentzel, Gordon & Betty Moore Foundation

Bios of attendees in #literature theme

  1. Phil Campbell, Nature, Editor-in-Chief
  2. Matthew Cockerill, BioMed Central
  3. Anita De Waard , Disruptive Technologies Director, Elsevier Labs
  4. Christopher Erdmann, CfA Library
  5. Michael Fisher, Harvard University Press
  6. Jessie Hey, University of Southampton 
  7. Zak Kohane, Harvard HMS Library
  8. Charles Parnot, Papers 
  9. David Shotton, Oxford (Zoology)
  10. Gosia Stergios, Harvard
  11. Kaitlin Thaney, Digital Science
  12. Alex Wade, Microsoft Research

The Five Stars of Online Journal Articles – an article evaluation framework

Those attending the Transforming Scholarly Communication workshop might be interested to read my thoughts about evaluating journal articles, in a new article with the above title:

There is a summary blog post at http://opencitations.wordpress.com/2011/10/17/the-five-stars-of-online-journal-articles-3/.  This points to a longer article, submitted for publication, with a preprint in Nature Preceedings (http://precedings.nature.com/documents/6542/).


Demonstrations on LITERATURE on Meeting Day 1

LITERATURE Publications based on text and still images (creation, reviewing, dissemination, archiving, reproducibility)

Facilitator: Phil Campbell, Editor-in-Chief, Nature